@proceedings{ws-2004-international,
    title = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1200/"
}
@inproceedings{zhou-2004-recognizing,
    title = "Recognizing Names in Biomedical Texts using Hidden {M}arkov Model and {SVM} plus Sigmoid",
    author = "Zhou, GuoDong",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1201/",
    pages = "1--7"
}
@inproceedings{tbahriti-etal-2004-using,
    title = "Using Argumentation to Retrieve Articles with Similar Citations from {MEDLINE}",
    author = "Tbahriti, Imad  and
      Chichester, Christine  and
      Lisacek, Fr{\'e}d{\'e}rique  and
      Ruch, Patrick",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1202/",
    pages = "8--14"
}
@inproceedings{pyysalo-etal-2004-analysis,
    title = "Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions",
    author = {Pyysalo, Sampo  and
      Ginter, Filip  and
      Pahikkala, Tapio  and
      Boberg, Jorma  and
      J{\"a}rvinen, Jouni  and
      Salakoski, Tapio  and
      Koivula, Jeppe},
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1203/",
    pages = "15--21"
}
@inproceedings{huang-etal-2004-discovering,
    title = "Discovering Patterns to Extract Protein-Protein Interactions from Full Biomedical Texts",
    author = "Huang, Minlie  and
      Zhu, Xiaoyan  and
      Payan, Donald G.  and
      Qu, Kunbin  and
      Li, Ming",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1204/",
    pages = "22--28"
}
@inproceedings{mizuta-collier-2004-zone,
    title = "Zone Identification in Biology Articles as a Basis for Information Extraction",
    author = "Mizuta, Yoko  and
      Collier, Nigel",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1205/",
    pages = "29--35"
}
@inproceedings{krallinger-etal-2004-assessing,
    title = "Assessing the Correlation between Contextual Patterns and Biological Entity Tagging",
    author = "Krallinger, M.  and
      Padr{\'o}n, M.  and
      Blaschke, C.  and
      Valencia, A.",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1206/",
    pages = "36--42"
}
@inproceedings{alphonse-etal-2004-event,
    title = "Event-Based Information Extraction for the Biomedical Domain: the Caderige Project",
    author = "Alphonse, Erick  and
      Aubin, Sophie  and
      Bessi{\`e}res, Philippe  and
      Bisson, Gilles  and
      Hamon, Thierry  and
      Lagarrigue, Sandrine  and
      Nazarenko, Adeline  and
      Manine, Alain-Pierre  and
      N{\'e}dellec, Claire  and
      Vetah, Mohamed Ould Abdel  and
      Poibeau, Thierry  and
      Weissenbacher, Davy",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1207/",
    pages = "43--49"
}
@inproceedings{kirsch-rebholz-schuhmann-2004-distributed,
    title = "Distributed Modules for Text Annotation and {IE} Applied to the Biomedical Domain",
    author = "Kirsch, Harald  and
      Rebholz-Schuhmann, Dietrich",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1208/",
    pages = "50--56"
}
@inproceedings{lee-etal-2004-support,
    title = "Support Vector Machine Approach to Extracting Gene References into Function from Biological Documents",
    author = "Lee, Chih  and
      Hou, Wen-Juan  and
      Chen, Hsin-Hsi",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1209/",
    pages = "57--60"
}
@inproceedings{clemente-litran-etal-2004-improving,
    title = "Improving the Identification of Non-Anaphoric it using Support Vector Machines",
    author = "Clemente Litr{\'a}n, Jos{\'e} Carlos  and
      Satou, Kenji  and
      Torisawa, Kentaro",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1210/",
    pages = "61--64"
}
@inproceedings{pakhomov-etal-2004-creating,
    title = "Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information",
    author = "Pakhomov, Serguei  and
      Coden, Anni  and
      Chute, Christopher",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1211/",
    pages = "65--68"
}
@inproceedings{sinclair-webber-2004-classification,
    title = "Classification from Full Text: A Comparison of Canonical Sections of Scientific Papers",
    author = "Sinclair, Gail  and
      Webber, Bonnie",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1212/",
    pages = "69--72"
}
@inproceedings{collier-kim-2004-introduction,
    title = "Introduction to the Bio-entity Recognition Task at {JNLPBA}",
    author = "Collier, Nigel  and
      Ohta, Tomoko  and
      Tsuruoka, Yoshimasa  and
      Tateisi, Yuka  and
      Kim, Jin-Dong",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1213/",
    pages = "73--78"
}
@inproceedings{park-etal-2004-incorporating,
    title = "Incorporating Lexical Knowledge into Biomedical {NE} Recognition",
    author = "Park, Kyung-Mi  and
      Kim, Seon-Ho  and
      Lee, Ki-Joong  and
      Lee, Do-Gil  and
      Rim, Hae-Chang",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1214/",
    pages = "79--82"
}
@inproceedings{lee-etal-2004-annotating,
    title = "Annotating Multiple Types of Biomedical Entities: A Single Word Classification Approach",
    author = "Lee, Chih  and
      Hou, Wen-Juan  and
      Chen, Hsin-Hsi",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1215/",
    pages = "83--86"
}
@inproceedings{zhao-2004-named,
    title = "Named Entity Recognition in Biomedical Texts using an {HMM} Model",
    author = "Zhao, Shaojun",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1216/",
    pages = "87--90"
}
@inproceedings{finkel-etal-2004-exploiting,
    title = "Exploiting Context for Biomedical Entity Recognition: From Syntax to the Web",
    author = "Finkel, Jenny  and
      Dingare, Shipra  and
      Nguyen, Huy  and
      Nissim, Malvina  and
      Manning, Christopher  and
      Sinclair, Gail",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1217/",
    pages = "91--94"
}
@inproceedings{rossler-2004-adapting,
    title = "Adapting an {NER}-System for {G}erman to the Biomedical Domain",
    author = {R{\"o}ssler, Marc},
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1218/",
    pages = "95--98"
}
@inproceedings{zhou-su-2004-exploring,
    title = "Exploring Deep Knowledge Resources in Biomedical Name Recognition",
    author = "Zhou, GuoDong  and
      Su, Jian",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1219/",
    pages = "99--102"
}
@inproceedings{song-etal-2004-posbiotm,
    title = "{POSBIOTM}-{NER} in the Shared Task of {B}io{NLP}/{NLPBA}2004",
    author = "Song, Yu  and
      Kim, Eunju  and
      Lee, Gary Geunbae  and
      Yi, Byoung-kee",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1220/",
    pages = "103--106"
}
@inproceedings{settles-2004-biomedical,
    title = "Biomedical Named Entity Recognition using Conditional Random Fields and Rich Feature Sets",
    author = "Settles, Burr",
    editor = "Collier, Nigel  and
      Ruch, Patrick  and
      Nazarenko, Adeline",
    booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
    month = aug # " 28th and 29th",
    year = "2004",
    address = "Geneva, Switzerland",
    publisher = "COLING",
    url = "https://preview.aclanthology.org/fix-old-resolve/W04-1221/",
    pages = "107--110"
}