@proceedings{bionlp-2022-biomedical,
    title = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.0/"
}
@inproceedings{boissonnet-etal-2022-explainable,
    title = "Explainable Assessment of Healthcare Articles with {QA}",
    author = "Boissonnet, Alodie  and
      Saeidi, Marzieh  and
      Plachouras, Vassilis  and
      Vlachos, Andreas",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.1/",
    doi = "10.18653/v1/2022.bionlp-1.1",
    pages = "1--9"
}
@inproceedings{giorgi-etal-2022-sequence,
    title = "A sequence-to-sequence approach for document-level relation extraction",
    author = "Giorgi, John  and
      Bader, Gary  and
      Wang, Bo",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.2/",
    doi = "10.18653/v1/2022.bionlp-1.2",
    pages = "10--25"
}
@inproceedings{abaho-etal-2022-position,
    title = "Position-based Prompting for Health Outcome Generation",
    author = "Abaho, Micheal  and
      Bollegala, Danushka  and
      Williamson, Paula  and
      Dodd, Susanna",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.3/",
    doi = "10.18653/v1/2022.bionlp-1.3",
    pages = "26--36"
}
@inproceedings{farzana-etal-2022-say,
    title = "How You Say It Matters: Measuring the Impact of Verbal Disfluency Tags on Automated Dementia Detection",
    author = "Farzana, Shahla  and
      Deshpande, Ashwin  and
      Parde, Natalie",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.4/",
    doi = "10.18653/v1/2022.bionlp-1.4",
    pages = "37--48"
}
@inproceedings{soleimani-etal-2022-zero,
    title = "Zero-Shot Aspect-Based Scientific Document Summarization using Self-Supervised Pre-training",
    author = "Soleimani, Amir  and
      Nikoulina, Vassilina  and
      Favre, Benoit  and
      Ait Mokhtar, Salah",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.5/",
    doi = "10.18653/v1/2022.bionlp-1.5",
    pages = "49--62"
}
@inproceedings{pappas-etal-2022-data,
    title = "Data Augmentation for Biomedical Factoid Question Answering",
    author = "Pappas, Dimitris  and
      Malakasiotis, Prodromos  and
      Androutsopoulos, Ion",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.6/",
    doi = "10.18653/v1/2022.bionlp-1.6",
    pages = "63--81"
}
@inproceedings{papanikolaou-etal-2022-slot,
    title = "Slot Filling for Biomedical Information Extraction",
    author = "Papanikolaou, Yannis  and
      Staib, Marlene  and
      Grace, Justin Joshua  and
      Bennett, Francine",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.7/",
    doi = "10.18653/v1/2022.bionlp-1.7",
    pages = "82--90"
}
@inproceedings{zeng-etal-2022-automatic,
    title = "Automatic Biomedical Term Clustering by Learning Fine-grained Term Representations",
    author = "Zeng, Sihang  and
      Yuan, Zheng  and
      Yu, Sheng",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.8/",
    doi = "10.18653/v1/2022.bionlp-1.8",
    pages = "91--96"
}
@inproceedings{yuan-etal-2022-biobart,
    title = "{B}io{BART}: Pretraining and Evaluation of A Biomedical Generative Language Model",
    author = "Yuan, Hongyi  and
      Yuan, Zheng  and
      Gan, Ruyi  and
      Zhang, Jiaxing  and
      Xie, Yutao  and
      Yu, Sheng",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.9/",
    doi = "10.18653/v1/2022.bionlp-1.9",
    pages = "97--109"
}
@inproceedings{naseem-etal-2022-incorporating,
    title = "Incorporating Medical Knowledge to Transformer-based Language Models for Medical Dialogue Generation",
    author = "Naseem, Usman  and
      Bandi, Ajay  and
      Raza, Shaina  and
      Rashid, Junaid  and
      Chakravarthi, Bharathi Raja",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.10/",
    doi = "10.18653/v1/2022.bionlp-1.10",
    pages = "110--115"
}
@inproceedings{yan-2022-memory,
    title = "Memory-aligned Knowledge Graph for Clinically Accurate Radiology Image Report Generation",
    author = "Yan, Sixing",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.11/",
    doi = "10.18653/v1/2022.bionlp-1.11",
    pages = "116--122"
}
@inproceedings{phan-nguyen-2022-simple,
    title = "Simple Semantic-based Data Augmentation for Named Entity Recognition in Biomedical Texts",
    author = "Phan, Uyen  and
      Nguyen, Nhung",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.12/",
    doi = "10.18653/v1/2022.bionlp-1.12",
    pages = "123--129"
}
@inproceedings{watanabe-etal-2022-auxiliary,
    title = "Auxiliary Learning for Named Entity Recognition with Multiple Auxiliary Biomedical Training Data",
    author = "Watanabe, Taiki  and
      Ichikawa, Tomoya  and
      Tamura, Akihiro  and
      Iwakura, Tomoya  and
      Ma, Chunpeng  and
      Kato, Tsuneo",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.13/",
    doi = "10.18653/v1/2022.bionlp-1.13",
    pages = "130--139"
}
@inproceedings{cahyawijaya-etal-2022-snp2vec,
    title = "{SNP}2{V}ec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study",
    author = "Cahyawijaya, Samuel  and
      Yu, Tiezheng  and
      Liu, Zihan  and
      Zhou, Xiaopu  and
      Mak, Tze Wing Tiffany  and
      Ip, Yuk Yu Nancy  and
      Fung, Pascale",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.14/",
    doi = "10.18653/v1/2022.bionlp-1.14",
    pages = "140--154"
}
@inproceedings{khandelwal-etal-2022-biomedical,
    title = "Biomedical {NER} using Novel Schema and Distant Supervision",
    author = "Khandelwal, Anshita  and
      Kar, Alok  and
      Chikka, Veera Raghavendra  and
      Karlapalem, Kamalakar",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.15/",
    doi = "10.18653/v1/2022.bionlp-1.15",
    pages = "155--160"
}
@inproceedings{iinuma-etal-2022-improving,
    title = "Improving Supervised Drug-Protein Relation Extraction with Distantly Supervised Models",
    author = "Iinuma, Naoki  and
      Miwa, Makoto  and
      Sasaki, Yutaka",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.16/",
    doi = "10.18653/v1/2022.bionlp-1.16",
    pages = "161--170"
}
@inproceedings{trieu-etal-2022-named,
    title = "Named Entity Recognition for Cancer Immunology Research Using Distant Supervision",
    author = "Trieu, Hai-Long  and
      Miwa, Makoto  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.17/",
    doi = "10.18653/v1/2022.bionlp-1.17",
    pages = "171--177"
}
@inproceedings{witte-cimiano-2022-intra,
    title = "Intra-Template Entity Compatibility based Slot-Filling for Clinical Trial Information Extraction",
    author = "Witte, Christian  and
      Cimiano, Philipp",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.18/",
    doi = "10.18653/v1/2022.bionlp-1.18",
    pages = "178--192"
}
@inproceedings{carrino-etal-2022-pretrained,
    title = "Pretrained Biomedical Language Models for Clinical {NLP} in {S}panish",
    author = "Carrino, Casimiro Pio  and
      Llop, Joan  and
      P{\`a}mies, Marc  and
      Guti{\'e}rrez-Fandi{\~n}o, Asier  and
      Armengol-Estap{\'e}, Jordi  and
      Silveira-Ocampo, Joaqu{\'i}n  and
      Valencia, Alfonso  and
      Gonzalez-Agirre, Aitor  and
      Villegas, Marta",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.19/",
    doi = "10.18653/v1/2022.bionlp-1.19",
    pages = "193--199"
}
@inproceedings{amin-etal-2022-shot,
    title = "Few-Shot Cross-lingual Transfer for Coarse-grained De-identification of Code-Mixed Clinical Texts",
    author = "Amin, Saadullah  and
      Pokaratsiri Goldstein, Noon  and
      Wixted, Morgan  and
      Garcia-Rudolph, Alejandro  and
      Mart{\'i}nez-Costa, Catalina  and
      Neumann, Guenter",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.20/",
    doi = "10.18653/v1/2022.bionlp-1.20",
    pages = "200--211"
}
@inproceedings{li-etal-2022-vpai,
    title = "{VPAI}{\_}{L}ab at {M}ed{V}id{QA} 2022: A Two-Stage Cross-modal Fusion Method for Medical Instructional Video Classification",
    author = "Li, Bin  and
      Weng, Yixuan  and
      Xia, Fei  and
      Sun, Bin  and
      Li, Shutao",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.21/",
    doi = "10.18653/v1/2022.bionlp-1.21",
    pages = "212--219"
}
@inproceedings{bishop-etal-2022-gencomparesum,
    title = "{G}en{C}ompare{S}um: a hybrid unsupervised summarization method using salience",
    author = "Bishop, Jennifer  and
      Xie, Qianqian  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.22/",
    doi = "10.18653/v1/2022.bionlp-1.22",
    pages = "220--240"
}
@inproceedings{singha-roy-mercer-2022-biocite,
    title = "{B}io{C}ite: A Deep Learning-based Citation Linkage Framework for Biomedical Research Articles",
    author = "Singha Roy, Sudipta  and
      Mercer, Robert E.",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.23/",
    doi = "10.18653/v1/2022.bionlp-1.23",
    pages = "241--251"
}
@inproceedings{liang-etal-2022-low,
    title = "Low Resource Causal Event Detection from Biomedical Literature",
    author = "Liang, Zhengzhong  and
      Noriega-Atala, Enrique  and
      Morrison, Clayton  and
      Surdeanu, Mihai",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.24/",
    doi = "10.18653/v1/2022.bionlp-1.24",
    pages = "252--263"
}
@inproceedings{gupta-demner-fushman-2022-overview,
    title = "Overview of the {M}ed{V}id{QA} 2022 Shared Task on Medical Video Question-Answering",
    author = "Gupta, Deepak  and
      Demner-Fushman, Dina",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.25/",
    doi = "10.18653/v1/2022.bionlp-1.25",
    pages = "264--274"
}
@inproceedings{richie-etal-2022-inter,
    title = "Inter-annotator agreement is not the ceiling of machine learning performance: Evidence from a comprehensive set of simulations",
    author = "Richie, Russell  and
      Grover, Sachin  and
      Tsui, Fuchiang (Rich)",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.26/",
    doi = "10.18653/v1/2022.bionlp-1.26",
    pages = "275--284"
}
@inproceedings{das-etal-2022-conversational,
    title = "Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues",
    author = "Das, Avisha  and
      Selek, Salih  and
      Warner, Alia R.  and
      Zuo, Xu  and
      Hu, Yan  and
      Kuttichi Keloth, Vipina  and
      Li, Jianfu  and
      Zheng, W. Jim  and
      Xu, Hua",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.27/",
    doi = "10.18653/v1/2022.bionlp-1.27",
    pages = "285--297"
}
@inproceedings{wang-etal-2022-beeds,
    title = "{BEEDS}: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering",
    author = "Wang, Xing David  and
      Leser, Ulf  and
      Weber, Leon",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.28/",
    doi = "10.18653/v1/2022.bionlp-1.28",
    pages = "298--309"
}
@inproceedings{kim-nakashole-2022-data,
    title = "Data Augmentation for Rare Symptoms in Vaccine Side-Effect Detection",
    author = "Kim, Bosung  and
      Nakashole, Ndapa",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.29/",
    doi = "10.18653/v1/2022.bionlp-1.29",
    pages = "310--315"
}
@inproceedings{mitrofan-pais-2022-improving,
    title = "Improving {R}omanian {B}io{NER} Using a Biologically Inspired System",
    author = "Mitrofan, Maria  and
      Pais, Vasile",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.30/",
    doi = "10.18653/v1/2022.bionlp-1.30",
    pages = "316--322"
}
@inproceedings{sazzed-2022-banglabiomed,
    title = "{B}angla{B}io{M}ed: A Biomedical Named-Entity Annotated Corpus for {B}angla ({B}engali)",
    author = "Sazzed, Salim",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.31/",
    doi = "10.18653/v1/2022.bionlp-1.31",
    pages = "323--329"
}
@inproceedings{michalopoulos-etal-2022-icdbigbird,
    title = "{ICDB}ig{B}ird: A Contextual Embedding Model for {ICD} Code Classification",
    author = "Michalopoulos, George  and
      Malyska, Michal  and
      Sahar, Nicola  and
      Wong, Alexander  and
      Chen, Helen",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.32/",
    doi = "10.18653/v1/2022.bionlp-1.32",
    pages = "330--336"
}
@inproceedings{ngai-rudzicz-2022-doctor,
    title = "Doctor {XA}v{I}er: Explainable Diagnosis on Physician-Patient Dialogues and {XAI} Evaluation",
    author = "Ngai, Hillary  and
      Rudzicz, Frank",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.33/",
    doi = "10.18653/v1/2022.bionlp-1.33",
    pages = "337--344"
}
@inproceedings{dhrangadhariya-muller-2022-distant,
    title = "{DISTANT}-{CTO}: A Zero Cost, Distantly Supervised Approach to Improve Low-Resource Entity Extraction Using Clinical Trials Literature",
    author = {Dhrangadhariya, Anjani  and
      M{\"u}ller, Henning},
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.34/",
    doi = "10.18653/v1/2022.bionlp-1.34",
    pages = "345--358"
}
@inproceedings{tang-etal-2022-echogen,
    title = "{E}cho{G}en: Generating Conclusions from Echocardiogram Notes",
    author = "Tang, Liyan  and
      Kooragayalu, Shravan  and
      Wang, Yanshan  and
      Ding, Ying  and
      Durrett, Greg  and
      Rousseau, Justin F.  and
      Peng, Yifan",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.35/",
    doi = "10.18653/v1/2022.bionlp-1.35",
    pages = "359--368"
}
@inproceedings{xie-etal-2022-quantifying,
    title = "Quantifying Clinical Outcome Measures in Patients with Epilepsy Using the Electronic Health Record",
    author = "Xie, Kevin  and
      Litt, Brian  and
      Roth, Dan  and
      Ellis, Colin A.",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.36/",
    doi = "10.18653/v1/2022.bionlp-1.36",
    pages = "369--375"
}
@inproceedings{sarrouti-etal-2022-comparing,
    title = "Comparing Encoder-Only and Encoder-Decoder Transformers for Relation Extraction from Biomedical Texts: An Empirical Study on Ten Benchmark Datasets",
    author = "Sarrouti, Mourad  and
      Tao, Carson  and
      Mamy Randriamihaja, Yoann",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.37/",
    doi = "10.18653/v1/2022.bionlp-1.37",
    pages = "376--382"
}
@inproceedings{vakili-dalianis-2022-utility,
    title = "Utility Preservation of Clinical Text After De-Identification",
    author = "Vakili, Thomas  and
      Dalianis, Hercules",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.38/",
    doi = "10.18653/v1/2022.bionlp-1.38",
    pages = "383--388"
}
@inproceedings{falis-etal-2022-horses,
    title = "Horses to Zebras: Ontology-Guided Data Augmentation and Synthesis for {ICD}-9 Coding",
    author = "Falis, Mat{\'u}{\v{s}}  and
      Dong, Hang  and
      Birch, Alexandra  and
      Alex, Beatrice",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.39/",
    doi = "10.18653/v1/2022.bionlp-1.39",
    pages = "389--401"
}
@inproceedings{chandak-etal-2022-towards,
    title = "Towards Automatic Curation of Antibiotic Resistance Genes via Statement Extraction from Scientific Papers: A Benchmark Dataset and Models",
    author = "Chandak, Sidhant  and
      Zhang, Liqing  and
      Brown, Connor  and
      Huang, Lifu",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.40/",
    doi = "10.18653/v1/2022.bionlp-1.40",
    pages = "402--411"
}
@inproceedings{wood-doughty-etal-2022-model,
    title = "Model Distillation for Faithful Explanations of Medical Code Predictions",
    author = "Wood-Doughty, Zach  and
      Cachola, Isabel  and
      Dredze, Mark",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.41/",
    doi = "10.18653/v1/2022.bionlp-1.41",
    pages = "412--425"
}
@inproceedings{liang-etal-2022-towards,
    title = "Towards Generalizable Methods for Automating Risk Score Calculation",
    author = "Liang, Jennifer J  and
      Lehman, Eric  and
      Iyengar, Ananya  and
      Mahajan, Diwakar  and
      Raghavan, Preethi  and
      Chang, Cindy Y.  and
      Szolovits, Peter",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.42/",
    doi = "10.18653/v1/2022.bionlp-1.42",
    pages = "426--431"
}
@inproceedings{kusa-etal-2022-dossier,
    title = "{D}o{SSIER} at {M}ed{V}id{QA} 2022: Text-based Approaches to Medical Video Answer Localization Problem",
    author = "Kusa, Wojciech  and
      Peikos, Georgios  and
      Espitia, {\'O}scar  and
      Hanbury, Allan  and
      Pasi, Gabriella",
    editor = "Demner-Fushman, Dina  and
      Cohen, Kevin Bretonnel  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 21st Workshop on Biomedical Language Processing",
    month = may,
    year = "2022",
    address = "Dublin, Ireland",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/2022.bionlp-1.43/",
    doi = "10.18653/v1/2022.bionlp-1.43",
    pages = "432--440"
}