Named Entity Recognition (NER) state-of-the-art methods requires high-quality labeled datasets. Issues such as scarcity of labeled data, under-representation of entities, and privacy concerns with using sensitive data for training, can be significant barriers. Generating synthetic data to train models is a promising solution to mitigate these problems. We propose ECG-QALM, a contextual question and answering approach using pre-trained language models to synthetically generate entity-controlled text. Generated text is then used to augment small labeled datasets for downstream NER tasks. We evaluate our method on two publicly available datasets. We find ECG-QALM is capable of producing full text samples with desired entities appearing in a controllable way, while retaining sentence coherence closest to the real world data. Evaluations on NER tasks show significant improvements (75% - 140%) in low-labeled data regimes.

Monitoring patients in ICU is a challenging and high-cost task. Hence, predicting the condition of patients during their ICU stay can help provide better acute care and plan the hospital’s resources. There has been continuous progress in machine learning research for ICU management, and most of this work has focused on using time series signals recorded by ICU instruments. In our work, we show that adding clinical notes as another modality improves the performance of the model for three benchmark tasks: in-hospital mortality prediction, modeling decompensation, and length of stay forecasting that play an important role in ICU management. While the time-series data is measured at regular intervals, doctor notes are charted at irregular times, making it challenging to model them together. We propose a method to model them jointly, achieving considerable improvement across benchmark tasks over baseline time-series model.