Biomedical Natural Language Processing Workshop (2016)
- Venue:
- BioNLP
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Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii
Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii
A Machine Learning Approach to Clinical Terms Normalization
José Castaño | María Laura Gambarte | Hee Joon Park | Maria del Pilar Avila Williams | David Pérez | Fernando Campos | Daniel Luna | Sonia Benítez | Hernán Berinsky | Sofía Zanetti
José Castaño | María Laura Gambarte | Hee Joon Park | Maria del Pilar Avila Williams | David Pérez | Fernando Campos | Daniel Luna | Sonia Benítez | Hernán Berinsky | Sofía Zanetti
Improved Semantic Representation for Domain-Specific Entities
Mohammad Taher Pilehvar | Nigel Collier
Mohammad Taher Pilehvar | Nigel Collier
Identification, characterization, and grounding of gradable terms in clinical text
Chaitanya Shivade | Marie-Catherine de Marneffe | Eric Fosler-Lussier | Albert M. Lai
Chaitanya Shivade | Marie-Catherine de Marneffe | Eric Fosler-Lussier | Albert M. Lai
Graph-based Semi-supervised Gene Mention Tagging
Golnar Sheikhshab | Elizabeth Starks | Aly Karsan | Anoop Sarkar | Inanc Birol
Golnar Sheikhshab | Elizabeth Starks | Aly Karsan | Anoop Sarkar | Inanc Birol
Feature Derivation for Exploitation of Distant Annotation via Pattern Induction against Dependency Parses
Dayne Freitag | John Niekrasz
Dayne Freitag | John Niekrasz
SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco A. Valenzuela-Escárcega | Gus Hahn-Powell | Dane Bell | Mihai Surdeanu
Marco A. Valenzuela-Escárcega | Gus Hahn-Powell | Dane Bell | Mihai Surdeanu
Disambiguation of entities in MEDLINE abstracts by combining MeSH terms with knowledge
Amy Siu | Patrick Ernst | Gerhard Weikum
Amy Siu | Patrick Ernst | Gerhard Weikum
Using Distributed Representations to Disambiguate Biomedical and Clinical Concepts
Stéphan Tulkens | Simon Suster | Walter Daelemans
Stéphan Tulkens | Simon Suster | Walter Daelemans
Unsupervised Document Classification with Informed Topic Models
Timothy Miller | Dmitriy Dligach | Guergana Savova
Timothy Miller | Dmitriy Dligach | Guergana Savova
Vocabulary Development To Support Information Extraction of Substance Abuse from Psychiatry Notes
Sumithra Velupillai | Danielle L. Mowery | Mike Conway | John Hurdle | Brent Kious
Sumithra Velupillai | Danielle L. Mowery | Mike Conway | John Hurdle | Brent Kious
Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute
Kai Hakala | Suwisa Kaewphan | Tapio Salakoski | Filip Ginter
Kai Hakala | Suwisa Kaewphan | Tapio Salakoski | Filip Ginter
Improving Temporal Relation Extraction with Training Instance Augmentation
Chen Lin | Timothy Miller | Dmitriy Dligach | Steven Bethard | Guergana Savova
Chen Lin | Timothy Miller | Dmitriy Dligach | Steven Bethard | Guergana Savova
Using Centroids of Word Embeddings and Word Mover’s Distance for Biomedical Document Retrieval in Question Answering
Georgios-Ioannis Brokos | Prodromos Malakasiotis | Ion Androutsopoulos
Georgios-Ioannis Brokos | Prodromos Malakasiotis | Ion Androutsopoulos
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael Spranger | Sucheendra Palaniappan | Samik Gosh
Michael Spranger | Sucheendra Palaniappan | Samik Gosh
Construction of a Personal Experience Tweet Corpus for Health Surveillance
Keyuan Jiang | Ricardo Calix | Matrika Gupta
Keyuan Jiang | Ricardo Calix | Matrika Gupta
Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification
Nut Limsopatham | Nigel Collier
Nut Limsopatham | Nigel Collier
PubTermVariants: biomedical term variants and their use for PubMed search
Lana Yeganova | Won Kim | Sun Kim | Rezarta Islamaj Doğan | Wanli Liu | Donald C Comeau | Zhiyong Lu | W John Wilbur
Lana Yeganova | Won Kim | Sun Kim | Rezarta Islamaj Doğan | Wanli Liu | Donald C Comeau | Zhiyong Lu | W John Wilbur
This before That: Causal Precedence in the Biomedical Domain
Gus Hahn-Powell | Dane Bell | Marco A. Valenzuela-Escárcega | Mihai Surdeanu
Gus Hahn-Powell | Dane Bell | Marco A. Valenzuela-Escárcega | Mihai Surdeanu
Syntactic methods for negation detection in radiology reports in Spanish
Viviana Cotik | Vanesa Stricker | Jorge Vivaldi | Horacio Rodriguez
Viviana Cotik | Vanesa Stricker | Jorge Vivaldi | Horacio Rodriguez
How to Train good Word Embeddings for Biomedical NLP
Billy Chiu | Gamal Crichton | Anna Korhonen | Sampo Pyysalo
Billy Chiu | Gamal Crichton | Anna Korhonen | Sampo Pyysalo
An Information Foraging Approach to Determining the Number of Relevant Features
Brian Connolly | Benjamin Glass | John Pestian
Brian Connolly | Benjamin Glass | John Pestian
Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians
Brian E. Chapman | Danielle L. Mowery | Evan Narasimhan | Neel Patel | Wendy Chapman | Marta Heilbrun
Brian E. Chapman | Danielle L. Mowery | Evan Narasimhan | Neel Patel | Wendy Chapman | Marta Heilbrun
Applying deep learning on electronic health records in Swedish to predict healthcare-associated infections
Olof Jacobson | Hercules Dalianis
Olof Jacobson | Hercules Dalianis
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Proceedings of the 4th BioNLP Shared Task Workshop
Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016.
Estelle Chaix | Bertrand Dubreucq | Abdelhak Fatihi | Dialekti Valsamou | Robert Bossy | Mouhamadou Ba | Louise Deléger | Pierre Zweigenbaum | Philippe Bessières | Loic Lepiniec | Claire Nédellec
Estelle Chaix | Bertrand Dubreucq | Abdelhak Fatihi | Dialekti Valsamou | Robert Bossy | Mouhamadou Ba | Louise Deléger | Pierre Zweigenbaum | Philippe Bessières | Loic Lepiniec | Claire Nédellec
Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016
Louise Deléger | Robert Bossy | Estelle Chaix | Mouhamadou Ba | Arnaud Ferré | Philippe Bessières | Claire Nédellec
Louise Deléger | Robert Bossy | Estelle Chaix | Mouhamadou Ba | Arnaud Ferré | Philippe Bessières | Claire Nédellec
Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development
Jin-Dong Kim | Yue Wang | Nicola Colic | Seung Han Beak | Yong Hwan Kim | Min Song
Jin-Dong Kim | Yue Wang | Nicola Colic | Seung Han Beak | Yong Hwan Kim | Min Song
A dictionary- and rule-based system for identification of bacteria and habitats in text
Helen V Cook | Evangelos Pafilis | Lars Juhl Jensen
Helen V Cook | Evangelos Pafilis | Lars Juhl Jensen
Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques
Mert Tiftikci | Hakan Şahin | Berfu Büyüköz | Alper Yayıkçı | Arzucan Özgür
Mert Tiftikci | Hakan Şahin | Berfu Büyüköz | Alper Yayıkçı | Arzucan Özgür
Identification of Mentions and Relations between Bacteria and Biotope from PubMed Abstracts
Cyril Grouin
Cyril Grouin
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016
Farrokh Mehryary | Jari Björne | Sampo Pyysalo | Tapio Salakoski | Filip Ginter
Farrokh Mehryary | Jari Björne | Sampo Pyysalo | Tapio Salakoski | Filip Ginter
SeeDev Binary Event Extraction using SVMs and a Rich Feature Set
Nagesh C. Panyam | Gitansh Khirbat | Karin Verspoor | Trevor Cohn | Kotagiri Ramamohanarao
Nagesh C. Panyam | Gitansh Khirbat | Karin Verspoor | Trevor Cohn | Kotagiri Ramamohanarao
Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision
Andre Lamurias | Miguel J. Rodrigues | Luka A. Clarke | Francisco M. Couto
Andre Lamurias | Miguel J. Rodrigues | Luka A. Clarke | Francisco M. Couto