Seyed Amin Tabatabaei


2023

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Annotating Research Infrastructure in Scientific Papers: An NLP-driven Approach
Seyed Amin Tabatabaei | Georgios Cheirmpos | Marius Doornenbal | Alberto Zigoni | Veronique Moore | Georgios Tsatsaronis
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 5: Industry Track)

In this work, we present a natural language processing (NLP) pipeline for the identification, extraction and linking of Research Infrastructure (RI) used in scientific publications. Links between scientific equipment and publications where the equipment was used can support multiple use cases, such as evaluating the impact of RI investment, and supporting Open Science and research reproducibility. These links can also be used to establish a profile of the RI portfolio of each institution and associate each equipment with scientific output. The system we are describing here is already in production, and has been used to address real business use cases, some of which we discuss in this paper. The computational pipeline at the heart of the system comprises both supervised and unsupervised modules to detect the usage of research equipment by processing the full text of the articles. Additionally, we have created a knowledge graph of RI, which is utilized to annotate the articles with metadata. Finally, examples of the business value of the insights made possible by this NLP pipeline are illustrated.

2022

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Find the Funding: Entity Linking with Incomplete Funding Knowledge Bases
Gizem Aydin | Seyed Amin Tabatabaei | George Tsatsaronis | Faegheh Hasibi
Proceedings of the 29th International Conference on Computational Linguistics

Automatic extraction of funding information from academic articles adds significant value to industry and research communities, including tracking research outcomes by funding organizations, profiling researchers and universities based on the received funding, and supporting open access policies. Two major challenges of identifying and linking funding entities are: (i) sparse graph structure of the Knowledge Base (KB), which makes the commonly used graph-based entity linking approaches suboptimal for the funding domain, (ii) missing entities in KB, which (unlike recent zero-shot approaches) requires marking entity mentions without KB entries as NIL. We propose an entity linking model that can perform NIL prediction and overcome data scarcity issues in a time and data-efficient manner. Our model builds on a transformer-based mention detection and a bi-encoder model to perform entity linking. We show that our model outperforms strong existing baselines.