MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation
Thomas Searle, Zeljko Kraljevic, Rebecca Bendayan, Daniel Bean, Richard Dobson
Abstract
An interface for building, improving and customising a given Named Entity Recognition and Linking (NER+L) model for biomedical domain text, and the efficient collation of accurate research use case specific training data and subsequent model training. Screencast demo available here: https://www.youtube.com/watch?v=lM914DQjvSo- Anthology ID:
- D19-3024
- Volume:
- Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP): System Demonstrations
- Month:
- November
- Year:
- 2019
- Address:
- Hong Kong, China
- Editors:
- Sebastian Padó, Ruihong Huang
- Venues:
- EMNLP | IJCNLP
- SIG:
- SIGDAT
- Publisher:
- Association for Computational Linguistics
- Note:
- Pages:
- 139–144
- Language:
- URL:
- https://aclanthology.org/D19-3024
- DOI:
- 10.18653/v1/D19-3024
- Cite (ACL):
- Thomas Searle, Zeljko Kraljevic, Rebecca Bendayan, Daniel Bean, and Richard Dobson. 2019. MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation. In Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP): System Demonstrations, pages 139–144, Hong Kong, China. Association for Computational Linguistics.
- Cite (Informal):
- MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation (Searle et al., EMNLP-IJCNLP 2019)
- PDF:
- https://preview.aclanthology.org/dois-2013-emnlp/D19-3024.pdf