Danielle L. Mowery
Also published as: Danielle L Mowery, Danielle Mowery
2026
SemAnTICA Lab at MediQA-SYNUR 2026: Route, Extract and Verify – An LLM-gated Ensemble for Parsing Nurse Dictations
Sy Hwang | Katherine S. Pitcher | Sue Hyon Kim | Yoonjae Lee | Hayoung K. Donelly | Harsh Bandhey | Andrew J. King | Karen O’Connor | Ryan J. Urbanowicz | Danielle L. Mowery
Proceedings of the 8th Workshop on Clinical Natural Language Processing (Clinical NLP) @ LREC 2026
Sy Hwang | Katherine S. Pitcher | Sue Hyon Kim | Yoonjae Lee | Hayoung K. Donelly | Harsh Bandhey | Andrew J. King | Karen O’Connor | Ryan J. Urbanowicz | Danielle L. Mowery
Proceedings of the 8th Workshop on Clinical Natural Language Processing (Clinical NLP) @ LREC 2026
We describe the Semantic Analysis of Text to Inform Clinical Action (SemAnTICA) Lab’s system for the MediQA-SYNUR 2026 shared task on extracting structured clinical observations from nurse dictation transcripts. The task requires mapping observations from disfluent conversational text to a large, fixed ontology and producing strictly normalized outputs, where small amounts of concept over-selection severely degrade micro-F1 score. Our approach evolved from a full-schema in-context baseline to a pipeline that explicitly separates concept selection from value extraction. We first preprocess transcripts, then generate transcript-specific concept candidates using hybrid sparse–dense retrieval. The candidates are then pruned with an evidence-based filter. For extraction, we adopt a system-level mixture-of-experts design with an online LLM router that selects a subset of domain-specialized experts per transcript. Each expert operates over a constrained schema partition to reduce spurious predictions. We enhance robustness with agreement-gated ensembling and targeted adjudication for ambiguous cases. Finally, we intersect complementary high-recall and high-precision runs to produce the best submission. Our system ranked first on the official test leaderboard with F1 = 0.814, P = 0.826, R = 0.801.
2017
A Corpus Analysis of Social Connections and Social Isolation in Adolescents Suffering from Depressive Disorders
Jia-Wen Guo | Danielle L Mowery | Djin Lai | Katherine Sward | Mike Conway
Proceedings of the Fourth Workshop on Computational Linguistics and Clinical Psychology — From Linguistic Signal to Clinical Reality
Jia-Wen Guo | Danielle L Mowery | Djin Lai | Katherine Sward | Mike Conway
Proceedings of the Fourth Workshop on Computational Linguistics and Clinical Psychology — From Linguistic Signal to Clinical Reality
Social connection and social isolation are associated with depressive symptoms, particularly in adolescents and young adults, but how these concepts are documented in clinical notes is unknown. This pilot study aimed to identify the topics relevant to social connection and isolation by analyzing 145 clinical notes from patients with depression diagnosis. We found that providers, including physicians, nurses, social workers, and psychologists, document descriptions of both social connection and social isolation.
Investigating the Documentation of Electronic Cigarette Use in the Veteran Affairs Electronic Health Record: A Pilot Study
Danielle Mowery | Brett South | Olga Patterson | Shu-Hong Zhu | Mike Conway
Proceedings of the 16th BioNLP Workshop
Danielle Mowery | Brett South | Olga Patterson | Shu-Hong Zhu | Mike Conway
Proceedings of the 16th BioNLP Workshop
In this paper, we present pilot work on characterising the documentation of electronic cigarettes (e-cigarettes) in the United States Veterans Administration Electronic Health Record. The Veterans Health Administration is the largest health care system in the United States with 1,233 health care facilities nationwide, serving 8.9 million veterans per year. We identified a random sample of 2000 Veterans Administration patients, coded as current tobacco users, from 2008 to 2014. Using simple keyword matching techniques combined with qualitative analysis, we investigated the prevalence and distribution of e-cigarette terms in these clinical notes, discovering that for current smokers, 11.9% of patient records contain an e-cigarette related term.
2016
Towards Automatically Classifying Depressive Symptoms from Twitter Data for Population Health
Danielle L. Mowery | Albert Park | Craig Bryan | Mike Conway
Proceedings of the Workshop on Computational Modeling of People’s Opinions, Personality, and Emotions in Social Media (PEOPLES)
Danielle L. Mowery | Albert Park | Craig Bryan | Mike Conway
Proceedings of the Workshop on Computational Modeling of People’s Opinions, Personality, and Emotions in Social Media (PEOPLES)
Major depressive disorder, a debilitating and burdensome disease experienced by individuals worldwide, can be defined by several depressive symptoms (e.g., anhedonia (inability to feel pleasure), depressed mood, difficulty concentrating, etc.). Individuals often discuss their experiences with depression symptoms on public social media platforms like Twitter, providing a potentially useful data source for monitoring population-level mental health risk factors. In a step towards developing an automated method to estimate the prevalence of symptoms associated with major depressive disorder over time in the United States using Twitter, we developed classifiers for discerning whether a Twitter tweet represents no evidence of depression or evidence of depression. If there was evidence of depression, we then classified whether the tweet contained a depressive symptom and if so, which of three subtypes: depressed mood, disturbed sleep, or fatigue or loss of energy. We observed that the most accurate classifiers could predict classes with high-to-moderate F1-score performances for no evidence of depression (85), evidence of depression (52), and depressive symptoms (49). We report moderate F1-scores for depressive symptoms ranging from 75 (fatigue or loss of energy) to 43 (disturbed sleep) to 35 (depressed mood). Our work demonstrates baseline approaches for automatically encoding Twitter data with granular depressive symptoms associated with major depressive disorder.
Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians
Brian E. Chapman | Danielle L. Mowery | Evan Narasimhan | Neel Patel | Wendy Chapman | Marta Heilbrun
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Brian E. Chapman | Danielle L. Mowery | Evan Narasimhan | Neel Patel | Wendy Chapman | Marta Heilbrun
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Vocabulary Development To Support Information Extraction of Substance Abuse from Psychiatry Notes
Sumithra Velupillai | Danielle L. Mowery | Mike Conway | John Hurdle | Brent Kious
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Sumithra Velupillai | Danielle L. Mowery | Mike Conway | John Hurdle | Brent Kious
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
2015
Towards Developing an Annotation Scheme for Depressive Disorder Symptoms: A Preliminary Study using Twitter Data
Danielle Mowery | Craig Bryan | Mike Conway
Proceedings of the 2nd Workshop on Computational Linguistics and Clinical Psychology: From Linguistic Signal to Clinical Reality
Danielle Mowery | Craig Bryan | Mike Conway
Proceedings of the 2nd Workshop on Computational Linguistics and Clinical Psychology: From Linguistic Signal to Clinical Reality
BluLab: Temporal Information Extraction for the 2015 Clinical TempEval Challenge
Sumithra Velupillai | Danielle L Mowery | Samir Abdelrahman | Lee Christensen | Wendy Chapman
Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015)
Sumithra Velupillai | Danielle L Mowery | Samir Abdelrahman | Lee Christensen | Wendy Chapman
Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015)
2014
Generating Patient Problem Lists from the ShARe Corpus using SNOMED CT/SNOMED CT CORE Problem List
Danielle Mowery | Mindy Ross | Sumithra Velupillai | Stephane Meystre | Janyce Wiebe | Wendy Chapman
Proceedings of BioNLP 2014
Danielle Mowery | Mindy Ross | Sumithra Velupillai | Stephane Meystre | Janyce Wiebe | Wendy Chapman
Proceedings of BioNLP 2014
2012
Medical diagnosis lost in translation – Analysis of uncertainty and negation expressions in English and Swedish clinical texts
Danielle L Mowery | Sumithra Velupillai | Wendy W Chapman
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Danielle L Mowery | Sumithra Velupillai | Wendy W Chapman
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
2009
Distinguishing Historical from Current Problems in Clinical Reports – Which Textual Features Help?
Danielle Mowery | Henk Harkema | John Dowling | Jonathan Lustgarten | Wendy Chapman
Proceedings of the BioNLP 2009 Workshop
Danielle Mowery | Henk Harkema | John Dowling | Jonathan Lustgarten | Wendy Chapman
Proceedings of the BioNLP 2009 Workshop
2008
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Co-authors
- Wendy Chapman 6
- Mike Conway 5
- Sumithra Velupillai 4
- Craig Bryan 2
- Henk Harkema 2
- Samir AbdelRahman 1
- Harsh Bandhey 1
- Brian E. Chapman 1
- Lee Christensen 1
- Hayoung K. Donelly 1
- John Dowling 1
- Jia-Wen Guo 1
- Marta Heilbrun 1
- John Hurdle 1
- Sy Hwang 1
- Sue Hyon Kim 1
- Andrew J. King 1
- Brent Kious 1
- Djin Lai 1
- Yoonjae Lee 1
- Jonathan Lustgarten 1
- Stephane Meystre 1
- Evan Narasimhan 1
- Karen O’Connor 1
- Y. Albert Park 1
- Neel Patel 1
- Olga Patterson 1
- Katherine S. Pitcher 1
- Mindy Ross 1
- Brett South 1
- Katherine Sward 1
- Ryan J. Urbanowicz 1
- Janyce Wiebe 1
- Shu-Hong Zhu 1