Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task - ACL Anthology

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Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task

Jun’ichi Tsujii (Editor)

Anthology ID:: W09-14
Month:: June
Year:: 2009
Address:: Boulder, Colorado
Venue:: BioNLP
SIG:: SIGBIOMED
Publisher:: Association for Computational Linguistics
URL:: https://preview.aclanthology.org/bootstrap-5/W09-14/
DOI:
Bib Export formats:: BibTeX
PDF:: https://preview.aclanthology.org/bootstrap-5/W09-14.pdf

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Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task
Jun’ichi Tsujii

Overview of BioNLP’09 Shared Task on Event Extraction
Jin-Dong Kim | Tomoko Ohta | Sampo Pyysalo | Yoshinobu Kano | Jun’ichi Tsujii

Extracting Complex Biological Events with Rich Graph-Based Feature Sets
Jari Björne | Juho Heimonen | Filip Ginter | Antti Airola | Tapio Pahikkala | Tapio Salakoski

Event Extraction from Trimmed Dependency Graphs
Ekaterina Buyko | Erik Faessler | Joachim Wermter | Udo Hahn

UZurich in the BioNLP 2009 Shared Task
Kaarel Kaljurand | Gerold Schneider | Fabio Rinaldi

Biomedical Event Extraction without Training Data
Andreas Vlachos | Paula Buttery | Diarmuid Ó Séaghdha | Ted Briscoe

A Markov Logic Approach to Bio-Molecular Event Extraction
Sebastian Riedel | Hong-Woo Chun | Toshihisa Takagi | Jun’ichi Tsujii

High-precision biological event extraction with a concept recognizer
K. Bretonnel Cohen | Karin Verspoor | Helen Johnson | Chris Roeder | Philip Ogren | William Baumgartner | Elizabeth White | Lawrence Hunter

A memory-based learning approach to event extraction in biomedical texts
Roser Morante | Vincent Van Asch | Walter Daelemans

Extraction of biomedical events using case-based reasoning
Mariana Neves | José-María Carazo | Alberto Pascual-Montano

Biomedical Event Annotation with CRFs and Precision Grammars
Andrew MacKinlay | David Martinez | Timothy Baldwin

Molecular event extraction from Link Grammar parse trees
Jörg Hakenberg | Illés Solt | Domonkos Tikk | Luis Tari | Astrid Rheinländer | Nguyen Quang Long | Graciela Gonzalez | Ulf Leser

Tunable Domain-Independent Event Extraction in the MIRA Framework
Georgi Georgiev | Kuzman Ganchev | Vassil Momchev | Deyan Peychev | Preslav Nakov | Angus Roberts

BioEve: Bio-Molecular Event Extraction from Text Using Semantic Classification and Dependency Parsing
Syed Toufeeq Ahmed | Radhika Nair | Chintan Patel | Hasan Davulcu

From Protein-Protein Interaction to Molecular Event Extraction
Rune Sætre | Makoto Miwa | Kazuhiro Yoshida | Jun’ichi Tsujii

A Multi-Phase Approach to Biomedical Event Extraction
Hyoung-Gyu Lee | Han-Cheol Cho | Min-Jeong Kim | Joo-Young Lee | Gumwon Hong | Hae-Chang Rim

Supervised Classification for Extracting Biomedical Events
Arzucan Özgür | Dragomir Radev

Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances
Farzaneh Sarafraz | James Eales | Reza Mohammadi | Jonathan Dickerson | David Robertson | Goran Nenadic

Syntactic Dependency Based Heuristics for Biological Event Extraction
Halil Kilicoglu | Sabine Bergler

Analyzing text in search of bio-molecular events: a high-precision machine learning framework
Sofie Van Landeghem | Yvan Saeys | Bernard De Baets | Yves Van de Peer

Exploring ways beyond the simple supervised learning approach for biological event extraction
György Móra | Richárd Farkas | György Szarvas | Zsolt Molnár