Biomedical Natural Language Processing Workshop (2013)

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bib (full) Proceedings of the 2013 Workshop on Biomedical Natural Language Processing

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Proceedings of the 2013 Workshop on Biomedical Natural Language Processing
Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii
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Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing
Pawel Matykiewicz | Kevin Cohen | Katherine D. Holland | Tracy A. Glauser | Shannon M. Standridge | Karin M. Verspoor | John Pestian
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Identification of Patients with Acute Lung Injury from Free-Text Chest X-Ray Reports
Meliha Yetisgen-Yildiz | Cosmin Bejan | Mark Wurfel
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Discovering Temporal Narrative Containers in Clinical Text
Timothy Miller | Steven Bethard | Dmitriy Dligach | Sameer Pradhan | Chen Lin | Guergana Savova
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Identifying Pathological Findings in German Radiology Reports Using a Syntacto-semantic Parsing Approach
Claudia Bretschneider | Sonja Zillner | Matthias Hammon
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Corpus-Driven Terminology Development: Populating Swedish SNOMED CT with Synonyms Extracted from Electronic Health Records
Aron Henriksson | Maria Skeppstedt | Maria Kvist | Martin Duneld | Mike Conway
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Unsupervised Linguistically-Driven Reliable Dependency Parses Detection and Self-Training for Adaptation to the Biomedical Domain
Felice Dell’Orletta | Giulia Venturi | Simonetta Montemagni
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Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis
Halil Kilicoglu | Marcelo Fiszman | Dina Demner-Fushman
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Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures
Sofie Van Landeghem | Suwisa Kaewphan | Filip Ginter | Yves Van de Peer
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Recognizing Sublanguages in Scientific Journal Articles through Closure Properties
Irina Temnikova | Kevin Cohen
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BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations
Juliane Fluck | Alexander Klenner | Sumit Madan | Sam Ansari | Tamara Bobic | Julia Hoeng | Martin Hofmann--Apitius | Manuel Peitsch
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Exploring Word Class N-grams to Measure Language Development in Children
Gabriela Ramírez de la Rosa | Thamar Solorio | Manuel Montes | Yang Liu | Lisa Bedore | Elizabeth Peña | Aquiles Iglesias
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Adapting a Parser to Clinical Text by Simple Pre-processing Rules
Maria Skeppstedt
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Using the Argumentative Structure of Scientific Literature to Improve Information Access
Antonio Jimeno Yepes | James Mork | Alan Aronson
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Using Latent Dirichlet Allocation for Child Narrative Analysis
Khairun-nisa Hassanali | Yang Liu | Thamar Solorio
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Effect of Out Of Vocabulary Terms on Inferring Eligibility Criteria for a Retrospective Study in Hebrew EHR
Raphael Cohen | Michael Elhadad
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Parallels between Linguistics and Biology
Sutanu Chakraborti | Ashish Tendulkar
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pdf (full)
bib (full) Proceedings of the BioNLP Shared Task 2013 Workshop

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Proceedings of the BioNLP Shared Task 2013 Workshop
Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum
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Overview of BioNLP Shared Task 2013
Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum
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The Genia Event Extraction Shared Task, 2013 Edition - Overview
Jin-Dong Kim | Yue Wang | Yamamoto Yasunori
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TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task
Jari Björne | Tapio Salakoski
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EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction
Kai Hakala | Sofie Van Landeghem | Tapio Salakoski | Yves Van de Peer | Filip Ginter
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Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data
Andrew MacKinlay | David Martinez | Antonio Jimeno Yepes | Haibin Liu | W. John Wilbur | Karin Verspoor
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Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities
Xiao Liu | Antoine Bordes | Yves Grandvalet
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GRO Task: Populating the Gene Regulation Ontology with events and relations
Jung-jae Kim | Xu Han | Vivian Lee | Dietrich Rebholz-Schuhmann
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Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou
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Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
Tomoko Ohta | Sampo Pyysalo | Rafal Rak | Andrew Rowley | Hong-Woo Chun | Sung-Jae Jung | Sung-Pil Choi | Sophia Ananiadou | Jun’ichi Tsujii
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Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics
Haibin Liu | Karin Verspoor | Donald C. Comeau | Andrew MacKinlay | W. John Wilbur
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Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.
SV Ramanan | P. Senthil Nathan
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NaCTeM EventMine for BioNLP 2013 CG and PC tasks
Makoto Miwa | Sophia Ananiadou
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BioNLP Shared Task 2013: Supporting Resources
Pontus Stenetorp | Wiktoria Golik | Thierry Hamon | Donald C. Comeau | Rezarta Islamaj Doğan | Haibin Liu | W. John Wilbur
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A fast rule-based approach for biomedical event extraction
Quoc-Chinh Bui | David Campos | Erik van Mulligen | Jan Kors
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Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information
Lishuang Li | Yiwen Wang | Degen Huang
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UZH in BioNLP 2013
Gerold Schneider | Simon Clematide | Tilia Ellendorff | Don Tuggener | Fabio Rinaldi | Gintarė Grigonytė
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A Hybrid approach for biomedical event extraction
Xuan Quang Pham | Minh Quang Le | Bao Quoc Ho
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Identification of Genia Events using Multiple Classifiers
Roland Roller | Mark Stevenson
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Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts
Mai-Vu Tran | Nigel Collier | Hoang-Quynh Le | Van-Thuy Phi | Thanh-Binh Pham
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Detecting Relations in the Gene Regulation Network
Thomas Provoost | Marie-Francine Moens
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Ontology-based semantic annotation: an automatic hybrid rule-based method
Sondes Bannour | Laurent Audibert | Henry Soldano
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Building A Contrasting Taxa Extractor for Relation Identification from Assertions: BIOlogical Taxonomy & Ontology Phrase Extraction System
Cyril Grouin
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BioNLP Shared Task 2013 – An overview of the Genic Regulation Network Task
Robert Bossy | Philippe Bessières | Claire Nédellec
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BioNLP shared Task 2013 – An Overview of the Bacteria Biotope Task
Robert Bossy | Wiktoria Golik | Zorana Ratkovic | Philippe Bessières | Claire Nédellec
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Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules
İlknur Karadeniz | Arzucan Özgür
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Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules
Slavko Žitnik | Marinka Žitnik | Blaž Zupan | Marko Bajec
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IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks
Vincent Claveau