Driven by recent advances in neural networks, various Deep Embedding Clustering (DEC) based short text clustering models are being developed. In these works, latent representation learning and text clustering are performed simultaneously. Although these methods are becoming increasingly popular, they use pure cluster-oriented objectives, which can produce meaningless representations. To alleviate this problem, several improvements have been developed to introduce additional learning objectives in the clustering process, such as models based on contrastive learning. However, existing efforts rely heavily on learning meaningful representations at the instance level. They have limited focus on learning global representations, which are necessary to capture the overall data structure at the cluster level. In this paper, we propose a novel DEC model, which we named the deep embedded clustering model with cluster-level representation learning (DECCRL) to jointly learn cluster and instance level representations. Here, we extend the embedded topic modelling approach to introduce reconstruction constraints to help learn cluster-level representations. Experimental results on real-world short text datasets demonstrate that our model produces meaningful clusters.

Contextualised word embeddings is a powerful tool to detect contextual synonyms. However, most of the current state-of-the-art (SOTA) deep learning concept extraction methods remain supervised and underexploit the potential of the context. In this paper, we propose a self-supervised pre-training approach which is able to detect contextual synonyms of concepts being training on the data created by shallow matching. We apply our methodology in the sparse multi-class setting (over 15,000 concepts) to extract phenotype information from electronic health records. We further investigate data augmentation techniques to address the problem of the class sparsity. Our approach achieves a new SOTA for the unsupervised phenotype concept annotation on clinical text on F1 and Recall outperforming the previous SOTA with a gain of up to 4.5 and 4.0 absolute points, respectively. After fine-tuning with as little as 20% of the labelled data, we also outperform BioBERT and ClinicalBERT. The extrinsic evaluation on three ICU benchmarks also shows the benefit of using the phenotypes annotated by our model as features.