Research in the biomedical domain is con- stantly challenged by its large amount of ever- evolving textual information. Biomedical re- searchers are usually required to conduct a lit- erature review before any medical interven- tion to assess the effectiveness of the con- cerned research. However, the process is time- consuming, and therefore, automation to some extent would help reduce the accompanying information overload. Multi-document sum- marization of scientific articles for literature reviews is one approximation of such automa- tion. Here in this paper, we describe our pipelined approach for the aforementioned task. We design a BERT-based extractive method followed by a BigBird PEGASUS-based ab- stractive pipeline for generating literature re- view summaries from the abstracts of biomedi- cal trial reports as part of the Multi-document Summarization for Literature Review (MSLR) shared task1 in the Scholarly Document Pro- cessing (SDP) workshop 20222. Our proposed model achieves the best performance on the MSLR-Cochrane leaderboard3 on majority of the evaluation metrics. Human scrutiny of our automatically generated summaries indicates that our approach is promising to yield readable multi-article summaries for conducting such lit- erature reviews.

This paper introduces the proposed summarization system of the AINLPML team for the First Shared Task on Multi-Perspective Scientific Document Summarization at SDP 2022. We present a method to produce abstractive summaries of scientific documents. First, we perform an extractive summarization step to identify the essential part of the paper. The extraction step includes utilizing a contributing sentence identification model to determine the contributing sentences in selected sections and portions of the text. In the next step, the extracted relevant information is used to condition the transformer language model to generate an abstractive summary. In particular, we fine-tuned the pre-trained BART model on the extracted summary from the previous step. Our proposed model successfully outperformed the baseline provided by the organizers by a significant margin. Our approach achieves the best average Rouge F1 Score, Rouge-2 F1 Score, and Rouge-L F1 Score among all submissions.