We develop Process Execution Graphs (PEG), a document-level representation of real-world wet lab biochemistry protocols, addressing challenges such as cross-sentence relations, long-range coreference, grounding, and implicit arguments. We manually annotate PEGs in a corpus of complex lab protocols with a novel interactive textual simulator that keeps track of entity traits and semantic constraints during annotation. We use this data to develop graph-prediction models, finding them to be good at entity identification and local relation extraction, while our corpus facilitates further exploration of challenging long-range relations.

Recent work has demonstrated that pre-training in-domain language models can boost performance when adapting to a new domain. However, the costs associated with pre-training raise an important question: given a fixed budget, what steps should an NLP practitioner take to maximize performance? In this paper, we study domain adaptation under budget constraints, and approach it as a customer choice problem between data annotation and pre-training. Specifically, we measure the annotation cost of three procedural text datasets and the pre-training cost of three in-domain language models. Then we evaluate the utility of different combinations of pre-training and data annotation under varying budget constraints to assess which combination strategy works best. We find that, for small budgets, spending all funds on annotation leads to the best performance; once the budget becomes large enough, a combination of data annotation and in-domain pre-training works more optimally. We therefore suggest that task-specific data annotation should be part of an economical strategy when adapting an NLP model to a new domain.

We present an approach to minimally supervised relation extraction that combines the benefits of learned representations and structured learning, and accurately predicts sentence-level relation mentions given only proposition-level supervision from a KB. By explicitly reasoning about missing data during learning, our approach enables large-scale training of 1D convolutional neural networks while mitigating the issue of label noise inherent in distant supervision. Our approach achieves state-of-the-art results on minimally supervised sentential relation extraction, outperforming a number of baselines, including a competitive approach that uses the attention layer of a purely neural model.