Retrieval-Augmented Generation (RAG) is introduced to enhance Large Language Models (LLMs) by integrating external knowledge. However, conventional RAG approaches treat retrieved documents as independent units, often overlooking their interdependencies. Hybrid-RAG, a recently proposed paradigm that combines textual documents and graph-structured relational information for RAG, mitigates this limitation by collecting entity documents during graph traversal. However, existing methods only retrieve related documents from local neighbors or subgraphs in the knowledge base, which often miss relevant information located further away from a global view. To overcome the above challenges, we propose CoRAG that dynamically chooses whether to retrieve information through direct textual search or explore graph structures in the knowledge base. Our architecture blends different retrieval results, ensuring the potentially correct answer is chosen based on the query context. The textual retrieval components also enable global retrieval by scoring non-neighboring entity documents based on semantic relevance, bypassing the locality constraints of graph traversal. Experiments on semi-structured (relational and textual) knowledge base QA benchmarks demonstrate the outstanding performance of CoRAG.

In recent years, Graph Neural Networks (GNNs) have become successful in molecular property prediction tasks such as toxicity analysis. However, due to the black-box nature of GNNs, their outputs can be concerning in high-stakes decision-making scenarios, e.g., drug discovery. Facing such an issue, Graph Counterfactual Explanation (GCE) has emerged as a promising approach to improve GNN transparency. However, current GCE methods usually fail to take domain-specific knowledge into consideration, which can result in outputs that are not easily comprehensible by humans. To address this challenge, we propose a novel GCE method, LLM-GCE, to unleash the power of large language models (LLMs) in explaining GNNs for molecular property prediction. Specifically, we utilize an autoencoder to generate the counterfactual graph topology from a set of counterfactual text pairs (CTPs) based on an input graph. Meanwhile, we also incorporate a CTP dynamic feedback module to mitigate LLM hallucination, which provides intermediate feedback derived from the generated counterfactuals as an attempt to give more faithful guidance. Extensive experiments demonstrate the superior performance of LLM-GCE. Our code is released on https://github.com/YinhanHe123/new_LLM4GNNExplanation.