Xiaoyong Wei


2025

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Removal of Hallucination on Hallucination: Debate-Augmented RAG
Wentao Hu | Wengyu Zhang | Yiyang Jiang | Chen Jason Zhang | Xiaoyong Wei | Li Qing
Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Retrieval-Augmented Generation (RAG) enhances factual accuracy by integrating external knowledge, yet it introduces a critical issue: erroneous or biased retrieval can mislead generation, compounding hallucinations, a phenomenon we term Hallucination on Hallucination. To address this, we propose Debate-Augmented RAG (DRAG), a training-free framework that integrates Multi-Agent Debate (MAD) mechanisms into both retrieval and generation stages. In retrieval, DRAG employs structured debates among proponents, opponents, and judges to refine retrieval quality and ensure factual reliability. In generation, DRAG introduces asymmetric information roles and adversarial debates, enhancing reasoning robustness and mitigating factual inconsistencies. Evaluations across multiple tasks demonstrate that DRAG improves retrieval reliability, reduces RAG-induced hallucinations, and significantly enhances overall factual accuracy. Our code is available at https://github.com/Huenao/Debate-Augmented-RAG.

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GLProtein: Global-and-Local Structure Aware Protein Representation Learning
Yunqing Liu | Wenqi Fan | Xiaoyong Wei | Li Qing
Findings of the Association for Computational Linguistics: EMNLP 2025

Proteins are central to biological systems, participating as building blocks across all forms of life. Despite advancements in understanding protein functions through protein sequence analysis, there remains potential for further exploration in integrating protein structural information. We argue that the structural information of proteins is not only limited to their 3D information but also encompasses information from amino acid molecules (local information) to protein-protein structure similarity (global information). To address this, we propose GLProtein, the first framework in protein pre-training that incorporates both global structural similarity and local amino acid details to enhance prediction accuracy and functional insights. GLProtein innovatively combines protein-masked modelling with triplet structure similarity scoring, protein 3D distance encoding and substructure-based amino acid molecule encoding. Experimental results demonstrate that GLProtein outperforms previous methods in several bioinformatics tasks, including predicting protein-protein interactions, contact prediction, and so on.

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Benchmarking for Domain-Specific LLMs: A Case Study on Academia and Beyond
Rubing Chen | Jiaxin Wu | Jian Wang | Xulu Zhang | Wenqi Fan | Chenghua Lin | Xiaoyong Wei | Li Qing
Findings of the Association for Computational Linguistics: EMNLP 2025

The increasing demand for domain-specific evaluation of large language models (LLMs) has led to the development of numerous benchmarks. These efforts often adhere to the principle of data scaling, relying on large corpora or extensive question-answer (QA) sets to ensure broad coverage. However, the impact of corpus and QA set design on the precision and recall of domain-specific LLM performance remains poorly understood. In this paper, we argue that data scaling is not always the optimal principle for domain-specific benchmark construction. Instead, we introduce Comp-Comp, an iterative benchmarking framework grounded in the principle of comprehensiveness and compactness. Comprehensiveness ensures semantic recall by covering the full breadth of the domain, while compactness improves precision by reducing redundancy and noise. To demonstrate the effectiveness of our approach, we present a case study conducted at a well-renowned university, resulting in the creation of PolyBench, a large-scale, high-quality academic benchmark. Although this study focuses on academia, the Comp-Comp framework is domain-agnostic and readily adaptable to a wide range of specialized fields. The source code and datasets can be accessed at https://github.com/Anya-RB-Chen/COMP-COMP.

2024

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Instruct Once, Chat Consistently in Multiple Rounds: An Efficient Tuning Framework for Dialogue
Jian Wang | Chak Tou Leong | Jiashuo Wang | Dongding Lin | Wenjie Li | Xiaoyong Wei
Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Tuning language models for dialogue generation has been a prevalent paradigm for building capable dialogue agents. Yet, traditional tuning narrowly views dialogue generation as resembling other language generation tasks, ignoring the role disparities between two speakers and the multi-round interactive process that dialogues ought to be. Such a manner often leads to unsatisfactory chat consistency for the built agent. In this work, we emphasize the interactive, communicative nature of dialogue and argue that it is more feasible to model the speaker roles of agent and user separately, enabling the agent to adhere to its role consistently. With this in mind, we propose an efficient Multi-round Interactive Dialogue Tuning (Midi-Tuning) framework. It models the agent and user individually with two adapters built upon large language models. The adapters make use of respective utterances round by round in alternating order and they are tuned via a round-level memory caching mechanism. Extensive experiments demonstrate that, our framework performs superior to traditional fine-tuning and harbors the tremendous potential for improving dialogue consistency.

2023

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Rethinking Multimodal Entity and Relation Extraction from a Translation Point of View
Changmeng Zheng | Junhao Feng | Yi Cai | Xiaoyong Wei | Qing Li
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

We revisit the multimodal entity and relation extraction from a translation point of view. Special attention is paid on the misalignment issue in text-image datasets which may mislead the learning. We are motivated by the fact that the cross-modal misalignment is a similar problem of cross-lingual divergence issue in machine translation. The problem can then be transformed and existing solutions can be borrowed by treating a text and its paired image as the translation to each other. We implement a multimodal back-translation using diffusion-based generative models for pseudo-paralleled pairs and a divergence estimator by constructing a high-resource corpora as a bridge for low-resource learners. Fine-grained confidence scores are generated to indicate both types and degrees of alignments with which better representations are obtained. The method has been validated in the experiments by outperforming 14 state-of-the-art methods in both entity and relation extraction tasks. The source code is available at https://github.com/thecharm/TMR.