Script R8: Plotting Bacterial Taxonomy from MetaPhlan
Load the libraries needed for analysis.
Read in the metadata and format it so that it matches the samples we are working with.
We only want to look at a certain number of taxa to make the data more visually informative.
Now we are ready to read in the MetaPhlAn merged output at the genus level and format it for plotting.
Format sample IDs.
Look at top 10 taxa.
Plot by site symbol and site categories.
